Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | DXC44_17500 | Not Available | Negative | 4100177 - 4101397 | 46479.7 |
| amidophosphoribosyltransferase | DXC44_17505 | Not Available | Positive | 4101702 - 4103108 | 51992.8 |
| peptidase t | DXC44_17510 | Not Available | Positive | 4103216 - 4104436 | 45345.2 |
| glycine cleavage system aminomethyltransferase gcvt | DXC44_17515 | Not Available | Positive | 4104472 - 4105557 | 39655.6 |
| sodium:proton antiporter | DXC44_17520 | Not Available | Positive | 4105763 - 4108030 | 84385.5 |
| hit family protein | DXC44_17525 | Not Available | Positive | 4108055 - 4108480 | 16329.5 |
| rna-binding s4 domain-containing protein | DXC44_17530 | Not Available | Negative | 4108571 - 4108999 | 16437.7 |
| aminoacyl-trna hydrolase | DXC44_17535 | Not Available | Negative | 4108999 - 4109562 | 20618.0 |
| 50s ribosomal protein l25 | DXC44_17540 | Not Available | Negative | 4109587 - 4110183 | 21429.4 |
| duf3276 family protein | DXC44_17545 | Not Available | Negative | 4110364 - 4110747 | 14786.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

