Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugative transposon protein trak | DXC44_17395 | Not Available | Negative | 4076061 - 4076684 | 24118.8 |
| conjugative transposon protein traj | DXC44_17400 | Not Available | Negative | 4076717 - 4077730 | 37603.0 |
| duf4141 domain-containing protein | DXC44_17405 | Not Available | Negative | 4077734 - 4078363 | 23963.7 |
| duf3876 domain-containing protein | DXC44_17410 | Not Available | Negative | 4078360 - 4078719 | 13482.1 |
| hypothetical protein | DXC44_17415 | Not Available | Negative | 4078763 - 4079386 | 24458.4 |
| trag family conjugative transposon atpase | DXC44_17420 | Not Available | Negative | 4079383 - 4080611 | 47400.6 |
| type ii pantothenate kinase | DXC44_17425 | Not Available | Negative | 4080922 - 4081746 | 29299.7 |
| 9-o-acetylesterase | DXC44_17430 | Not Available | Negative | 4081824 - 4083740 | 72660.6 |
| pap2 family protein | DXC44_17435 | Not Available | Negative | 4083778 - 4084395 | 23044.7 |
| response regulator | DXC44_17440 | Not Available | Negative | 4084502 - 4088491 | 152244.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

