Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4121 family protein | DXC44_17295 | Not Available | Positive | 4058253 - 4059065 | 31747.8 |
| sam-dependent dna methyltransferase | DXC44_17300 | Not Available | Positive | 4059087 - 4059806 | 26975.8 |
| duf932 domain-containing protein | DXC44_17305 | Not Available | Positive | 4059833 - 4060723 | 34013.6 |
| hypothetical protein | DXC44_17310 | Not Available | Positive | 4060811 - 4061077 | 10316.1 |
| hypothetical protein | DXC44_17315 | Not Available | Positive | 4061121 - 4061714 | 22648.1 |
| hypothetical protein | DXC44_17320 | Not Available | Positive | 4061711 - 4063645 | 77293.8 |
| hypothetical protein | DXC44_17325 | Not Available | Positive | 4063648 - 4063968 | 12035.5 |
| tonb-dependent receptor | DXC44_17330 | Not Available | Negative | 4064122 - 4066587 | 92060.3 |
| transcriptional repressor | DXC44_17335 | Not Available | Negative | 4066703 - 4067125 | 16154.5 |
| heavy-metal-associated domain-containing protein | DXC44_17340 | Not Available | Positive | 4067326 - 4067541 | 7961.65 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

