Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arylsulfatase | DXC44_17035 | Not Available | Negative | 3997343 - 3998941 | 60871.1 |
| glycoside hydrolase family 2 protein | DXC44_17040 | Not Available | Negative | 3999056 - 4001734 | 101266.0 |
| glycoside hydrolase | DXC44_17045 | Not Available | Negative | 4001797 - 4003878 | 80552.9 |
| duf4982 domain-containing protein | DXC44_17050 | Not Available | Negative | 4003875 - 4006322 | 92733.3 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_17055 | Not Available | Negative | 4006421 - 4007962 | 59338.3 |
| susc/raga family tonb-linked outer membrane protein | DXC44_17060 | Not Available | Negative | 4007976 - 4011329 | 124312.0 |
| fecr family protein | DXC44_17065 | Not Available | Negative | 4011482 - 4012417 | 36546.9 |
| rna polymerase sigma-70 factor | DXC44_17070 | Not Available | Negative | 4012472 - 4013062 | 23832.7 |
| hypothetical protein | DXC44_17075 | Not Available | Positive | 4013363 - 4014064 | 26655.2 |
| site-specific integrase | DXC44_17080 | Not Available | Positive | 4014072 - 4015286 | 46465.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

