Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ahpc/tsa family protein | DXC44_01520 | Not Available | Negative | 405759 - 406850 | 40190.0 |
| polyamine abc transporter atp-binding protein | DXC44_01530 | Not Available | Positive | 407379 - 408767 | 51886.3 |
| abc transporter permease | DXC44_01535 | Not Available | Positive | 408804 - 409577 | 28468.5 |
| abc transporter permease | DXC44_01540 | Not Available | Positive | 409571 - 410362 | 28734.3 |
| extracellular solute-binding protein | DXC44_01545 | Not Available | Positive | 410390 - 411700 | 50297.2 |
| ribose-phosphate pyrophosphokinase | DXC44_01550 | Not Available | Negative | 411830 - 412768 | 34190.5 |
| thiamine phosphate synthase | DXC44_01555 | Not Available | Negative | 412933 - 413541 | 22934.7 |
| hypothetical protein | DXC44_01560 | Not Available | Positive | 413761 - 414114 | 12947.3 |
| glutathionylspermidine synthase family protein | DXC44_01565 | Not Available | Positive | 414127 - 415251 | 43012.5 |
| hesa/moeb/thif family protein | DXC44_01570 | Not Available | Negative | 415364 - 416098 | 27043.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

