Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna-binding protein | DXC44_16825 | Not Available | Negative | 3947911 - 3948156 | 9049.81 |
| trigger factor | DXC44_16830 | Not Available | Positive | 3948538 - 3949893 | 51560.8 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | DXC44_16835 | Not Available | Positive | 3950074 - 3950745 | 24864.8 |
| atp-dependent clp protease atp-binding subunit clpx | DXC44_16840 | Not Available | Positive | 3950869 - 3952119 | 46679.9 |
| dna helicase recq | DXC44_16845 | Not Available | Positive | 3952277 - 3954457 | 81679.6 |
| helicase | DXC44_16850 | Not Available | Positive | 3955135 - 3957231 | 80620.3 |
| hypothetical protein | DXC44_16855 | Not Available | Negative | 3957355 - 3957789 | 17229.6 |
| imp dehydrogenase | DXC44_16865 | Not Available | Positive | 3958041 - 3959516 | 52760.1 |
| peptidylprolyl isomerase | DXC44_16870 | Not Available | Positive | 3959529 - 3960866 | 52206.3 |
| peptidyl-prolyl cis-trans isomerase | DXC44_16875 | Not Available | Positive | 3960903 - 3961775 | 34134.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

