Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_16715 | Not Available | Negative | 3926535 - 3926780 | 9041.7 |
| zeta toxin | DXC44_16720 | Not Available | Negative | 3926770 - 3927345 | 21483.9 |
| duf4488 domain-containing protein | DXC44_16725 | Not Available | Negative | 3927706 - 3928200 | 18600.8 |
| asparagine--trna ligase | DXC44_16730 | Not Available | Negative | 3928363 - 3929766 | 53432.1 |
| pseudouridine synthase | DXC44_16735 | Not Available | Negative | 3929789 - 3931255 | 56182.9 |
| adenylosuccinate lyase | DXC44_16740 | Not Available | Negative | 3931331 - 3932677 | 50932.1 |
| mate family efflux transporter | DXC44_16745 | Not Available | Negative | 3932771 - 3934120 | 49665.5 |
| aminopeptidase | DXC44_16750 | Not Available | Positive | 3934283 - 3935776 | 55015.9 |
| gntr family transcriptional regulator | DXC44_16755 | Not Available | Negative | 3935874 - 3936239 | 14368.4 |
| hypothetical protein | DXC44_16760 | Not Available | Negative | 3936236 - 3937126 | 33985.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

