Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metallophosphoesterase | DXC44_16665 | Not Available | Negative | 3919167 - 3920006 | 31352.6 |
| 1,4-dihydroxy-2-naphthoate polyprenyltransferase | DXC44_16670 | Not Available | Positive | 3920080 - 3920970 | 32692.7 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | DXC44_16675 | Not Available | Negative | 3921021 - 3921503 | 17475.2 |
| faa hydrolase family protein | DXC44_16680 | Not Available | Negative | 3921500 - 3922117 | 23340.1 |
| redox-sensing transcriptional repressor rex | DXC44_16685 | Not Available | Negative | 3922122 - 3922772 | 24251.6 |
| translation initiation factor | DXC44_16690 | Not Available | Positive | 3922890 - 3923228 | 12663.2 |
| elongation factor ts | DXC44_16695 | Not Available | Negative | 3923287 - 3924276 | 35504.8 |
| 30s ribosomal protein s2 | DXC44_16700 | Not Available | Negative | 3924409 - 3925248 | 30564.9 |
| 30s ribosomal protein s9 | DXC44_16705 | Not Available | Negative | 3925381 - 3925767 | 14527.7 |
| 50s ribosomal protein l13 | DXC44_16710 | Not Available | Negative | 3925774 - 3926235 | 17129.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

