Phocaeicola vulgatus strain TF05-18

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain TF05-18 is a Gram-positive, anaerobic bacterium characterized by its rod shape and the presence of flagella, despite its lack of mobility. This strain is classified within a mesophilic temperature range, indicating optimal growth at moderate temperatures. It is free-living and associated with the host organism, Homo sapiens, suggesting a potential role in the human microbiome. The strain features a single replicon and possesses two membranes, which is indicative of its cellular structure typical of certain Gram-positive bacteria. Phocaeicola vulgatus strain TF05-18 is primarily found in host-associated habitats, highlighting its ecological niche within human-associated environments. The insights into its biotic relationships suggest that this bacterium may contribute to the complex interactions within the human microbiome, potentially influencing host health and disease states. The presence of flagella, while not conferring mobility, may play a role in the bacterium's adherence to surfaces or in interactions with other microbial species in its environment. Understanding the characteristics of Phocaeicola vulgatus strain TF05-18 can provide valuable information regarding its ecological functions and potential applications in microbiome research.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain TF05-18

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain TF05-18
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain TF05-18 TF05-18.Scaf80, whole genome

Gene Summary

Adenine Count

1462332 bp

Thymine Count

1450009 bp

Guanine Count

1075488 bp

Cytosine Count

1073971 bp

Genome Length

5062435 bp

Protein-coding Genes

4141 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
prolipoprotein diacylglyceryl transferaseDXC44_16565Not AvailableNegative3900148 - 390095431284.6
diaminopimelate dehydrogenaseDXC44_16570Not AvailableNegative3901061 - 390196032291.9
holliday junction branch migration protein ruvaDXC44_16575Not AvailablePositive3902136 - 390272921141.8
hypothetical proteinDXC44_16580Not AvailableNegative3902817 - 390364130778.0
hdig domain-containing proteinDXC44_16585Not AvailablePositive3903659 - 390516157599.9
hemolysin iiiDXC44_16590Not AvailablePositive3905166 - 390580123650.2
anaerobic ribonucleoside triphosphate reductaseDXC44_16595Not AvailablePositive3906096 - 390837286287.2
anaerobic ribonucleoside-triphosphate reductase activating proteinDXC44_16600Not AvailablePositive3908378 - 390883617410.7
rip metalloprotease rsepDXC44_16605Not AvailableNegative3909411 - 391075450887.1
1-deoxy-d-xylulose-5-phosphate reductoisomeraseDXC44_16610Not AvailableNegative3910811 - 391195942392.3

Displaying genes 3211 – 3220 of 4227 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.