Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l31 type b | DXC44_16515 | Not Available | Positive | 3886615 - 3886869 | 9656.59 |
| duf3256 family protein | DXC44_16520 | Not Available | Negative | 3886954 - 3887601 | 24349.6 |
| phenylacetate--coa ligase | DXC44_16525 | Not Available | Positive | 3887715 - 3889013 | 49228.5 |
| amino acid-binding protein | DXC44_16530 | Not Available | Positive | 3889025 - 3889453 | 15643.0 |
| response regulator | DXC44_16535 | Not Available | Negative | 3889496 - 3892222 | 103062.0 |
| carbohydrate kinase | DXC44_16540 | Not Available | Negative | 3892418 - 3893305 | 32432.2 |
| mfs transporter | DXC44_16545 | Not Available | Negative | 3893333 - 3894493 | 41814.0 |
| duf4980 domain-containing protein | DXC44_16550 | Not Available | Negative | 3894509 - 3896392 | 70937.3 |
| tonb-dependent receptor | DXC44_16555 | Not Available | Negative | 3896541 - 3898859 | 86968.6 |
| dna-binding protein | DXC44_16560 | Not Available | Positive | 3899495 - 3900106 | 23004.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

