Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional adp-dependent nad(p)h-hydrate dehydratase/nad(p)h-hydrate epimerase | DXC44_16465 | Not Available | Positive | 3872316 - 3873851 | 56235.6 |
| duf4831 family protein | DXC44_16470 | Not Available | Positive | 3873888 - 3874937 | 38672.6 |
| mfs transporter | DXC44_16475 | Not Available | Negative | 3875019 - 3876407 | 51163.3 |
| duf3332 domain-containing protein | DXC44_16480 | Not Available | Positive | 3876581 - 3877132 | 19885.5 |
| duf4934 domain-containing protein | DXC44_16485 | Not Available | Positive | 3877213 - 3878445 | 46077.8 |
| tolc family protein | DXC44_16490 | Not Available | Negative | 3878526 - 3879899 | 50273.8 |
| hydrophobe/amphiphile efflux-1 family rnd transporter | DXC44_16495 | Not Available | Negative | 3879896 - 3883111 | 117313.0 |
| efflux rnd transporter periplasmic adaptor subunit | DXC44_16500 | Not Available | Negative | 3883120 - 3884235 | 40051.3 |
| arac family transcriptional regulator | DXC44_16505 | Not Available | Positive | 3884383 - 3885216 | 32289.8 |
| class ii fructose-1,6-bisphosphate aldolase | DXC44_16510 | Not Available | Negative | 3885279 - 3886283 | 36460.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

