Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-tetrahydrodipicolinate reductase | DXC44_16365 | Not Available | Negative | 3851775 - 3852530 | 27422.6 |
| duf2851 family protein | DXC44_16370 | Not Available | Positive | 3852614 - 3853879 | 48603.3 |
| metallophosphatase | DXC44_16375 | Not Available | Negative | 3854037 - 3855038 | 36945.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DXC44_16380 | Not Available | Negative | 3855064 - 3856548 | 55584.1 |
| susc/raga family tonb-linked outer membrane protein | DXC44_16385 | Not Available | Negative | 3856563 - 3859709 | 115904.0 |
| hypothetical protein | DXC44_16390 | Not Available | Negative | 3859748 - 3860437 | 26567.2 |
| lactaldehyde reductase | DXC44_16395 | Not Available | Negative | 3860471 - 3861625 | 40917.7 |
| helicase | DXC44_16400 | Not Available | Negative | 3861839 - 3863095 | 48865.9 |
| hypothetical protein | DXC44_16405 | Not Available | Positive | 3863380 - 3863624 | 8977.55 |
| phosphoribosylaminoimidazolecarboxamide formyltransferase | DXC44_16410 | Not Available | Positive | 3863804 - 3864979 | 43918.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

