Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 95 protein | DXC44_16315 | Not Available | Positive | 3833227 - 3835683 | 92159.2 |
| hybrid sensor histidine kinase/response regulator | DXC44_16320 | Not Available | Positive | 3835888 - 3839775 | 148472.0 |
| duf4976 domain-containing protein | DXC44_16325 | Not Available | Negative | 3839832 - 3841412 | 61341.8 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_16330 | Not Available | Negative | 3841446 - 3843287 | 69044.9 |
| tonb-dependent receptor | DXC44_16335 | Not Available | Negative | 3843300 - 3846554 | 120257.0 |
| mannonate dehydratase | DXC44_16340 | Not Available | Negative | 3846758 - 3847933 | 44467.5 |
| sdr family nad(p)-dependent oxidoreductase | DXC44_16345 | Not Available | Negative | 3847973 - 3848785 | 28669.7 |
| hypothetical protein | DXC44_16350 | Not Available | Negative | 3848790 - 3849446 | 25576.2 |
| signal peptidase i | DXC44_16355 | Not Available | Negative | 3849446 - 3850309 | 32796.6 |
| s26 family signal peptidase | DXC44_16360 | Not Available | Negative | 3850347 - 3851771 | 55195.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

