Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is110 family transposase | DXC44_16090 | Not Available | Negative | 3784304 - 3785350 | 40346.7 |
| is110 family transposase | DXC44_16095 | Not Available | Negative | 3785617 - 3786669 | 40465.2 |
| hypothetical protein | DXC44_16100 | Not Available | Negative | 3786858 - 3787166 | 11793.3 |
| hypothetical protein | DXC44_16105 | Not Available | Negative | 3787220 - 3787525 | 11151.9 |
| duf3873 domain-containing protein | DXC44_16110 | Not Available | Negative | 3787465 - 3787683 | 8460.93 |
| hypothetical protein | DXC44_16115 | Not Available | Negative | 3787874 - 3788236 | 13794.0 |
| site-specific integrase | DXC44_16120 | Not Available | Negative | 3788233 - 3789456 | 46534.1 |
| site-specific integrase | DXC44_16130 | Not Available | Positive | 3789969 - 3791198 | 46971.1 |
| site-specific integrase | DXC44_16135 | Not Available | Positive | 3791212 - 3792432 | 47385.8 |
| hypothetical protein | DXC44_16140 | Not Available | Positive | 3792454 - 3792828 | 14261.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

