Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugal transfer protein trag | DXC44_15975 | Not Available | Negative | 3765424 - 3767460 | 77345.4 |
| mobilization protein | DXC44_15980 | Not Available | Negative | 3767523 - 3768785 | 48326.2 |
| moba protein | DXC44_15985 | Not Available | Negative | 3768770 - 3769276 | 19754.1 |
| para family protein | DXC44_15990 | Not Available | Positive | 3769928 - 3770680 | 28688.8 |
| duf3408 domain-containing protein | DXC44_15995 | Not Available | Positive | 3770686 - 3771123 | 16651.1 |
| duf4122 domain-containing protein | DXC44_16000 | Not Available | Positive | 3771125 - 3771784 | 25128.6 |
| duf4134 domain-containing protein | DXC44_16005 | Not Available | Positive | 3771968 - 3772264 | 10372.8 |
| duf4133 domain-containing protein | DXC44_16010 | Not Available | Positive | 3772268 - 3772591 | 12208.4 |
| trag family conjugative transposon atpase | DXC44_16015 | Not Available | Positive | 3772588 - 3773931 | 51993.7 |
| site-specific integrase | DXC44_16030 | Not Available | Positive | 3775079 - 3776308 | 46841.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

