Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arc family dna-binding protein | DXC44_01420 | Not Available | Positive | 380250 - 380444 | 7530.27 |
| carboxypeptidase-like regulatory domain-containing protein | DXC44_01425 | Not Available | Positive | 380605 - 381882 | 49630.8 |
| rna polymerase sigma-70 factor | DXC44_01430 | Not Available | Positive | 381934 - 382485 | 22089.7 |
| anti-sigma factor | DXC44_01435 | Not Available | Positive | 382482 - 383336 | 32355.8 |
| carboxypeptidase-like regulatory domain-containing protein | DXC44_01440 | Not Available | Positive | 383346 - 384902 | 60058.5 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 386242 - 387775 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 387908 - 387984 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 387999 - 388072 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 388197 - 391089 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 391168 - 391278 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

