Phocaeicola vulgatus strain TF05-18

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain TF05-18 is a Gram-positive, anaerobic bacterium characterized by its rod shape and the presence of flagella, despite its lack of mobility. This strain is classified within a mesophilic temperature range, indicating optimal growth at moderate temperatures. It is free-living and associated with the host organism, Homo sapiens, suggesting a potential role in the human microbiome. The strain features a single replicon and possesses two membranes, which is indicative of its cellular structure typical of certain Gram-positive bacteria. Phocaeicola vulgatus strain TF05-18 is primarily found in host-associated habitats, highlighting its ecological niche within human-associated environments. The insights into its biotic relationships suggest that this bacterium may contribute to the complex interactions within the human microbiome, potentially influencing host health and disease states. The presence of flagella, while not conferring mobility, may play a role in the bacterium's adherence to surfaces or in interactions with other microbial species in its environment. Understanding the characteristics of Phocaeicola vulgatus strain TF05-18 can provide valuable information regarding its ecological functions and potential applications in microbiome research.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain TF05-18

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain TF05-18
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain TF05-18 TF05-18.Scaf80, whole genome

Gene Summary

Adenine Count

1462332 bp

Thymine Count

1450009 bp

Guanine Count

1075488 bp

Cytosine Count

1073971 bp

Genome Length

5062435 bp

Protein-coding Genes

4141 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad-dependent protein deacetylaseDXC44_15875Not AvailableNegative3745233 - 374613535196.3
acyl-[acyl-carrier-protein] thioesteraseDXC44_15880Not AvailablePositive3746366 - 374712129048.7
radical sam mobile pair protein aDXC44_15885Not AvailablePositive3747189 - 374786626736.4
radical sam mobile pair protein bDXC44_15890Not AvailablePositive3747851 - 374873233994.9
hypothetical proteinDXC44_15895Not AvailableNegative3748759 - 37489718081.8
arac family transcriptional regulatorDXC44_15900Not AvailableNegative3749029 - 374994636687.2
is66 family transposaseDXC44_15905Not AvailableNegative3750197 - 375179261243.5
is66 family insertion sequence hypothetical proteinDXC44_15910Not AvailableNegative3751881 - 375224314177.3
is66 family insertion sequence hypothetical proteinDXC44_15915Not AvailableNegative3752227 - 375266116601.3
arac family transcriptional regulatorDXC44_15920Not AvailablePositive3752859 - 375339820724.4

Displaying genes 3081 – 3090 of 4227 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.