Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | DXC44_15645 | Not Available | Negative | 3696585 - 3698186 | 60791.2 |
| hypothetical protein | DXC44_15650 | Not Available | Negative | 3698189 - 3698779 | 22678.0 |
| hypothetical protein | DXC44_15655 | Not Available | Negative | 3698826 - 3699461 | 24043.0 |
| xre family transcriptional regulator | DXC44_15670 | Not Available | Positive | 3701793 - 3702113 | 11948.9 |
| hypothetical protein | DXC44_15675 | Not Available | Positive | 3702117 - 3702302 | 7082.87 |
| hypothetical protein | DXC44_15680 | Not Available | Positive | 3702458 - 3704245 | 70344.0 |
| duf4238 domain-containing protein | DXC44_15685 | Not Available | Positive | 3704257 - 3705237 | 38352.7 |
| duf2971 domain-containing protein | DXC44_15690 | Not Available | Positive | 3705253 - 3706125 | 34531.5 |
| dna repair protein | DXC44_15700 | Not Available | Negative | 3706733 - 3707821 | 41868.9 |
| atp-binding protein | DXC44_15705 | Not Available | Positive | 3708355 - 3709563 | 46121.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

