Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | DXC44_15590 | Not Available | Negative | 3683827 - 3684486 | 23931.2 |
| trna threonylcarbamoyladenosine dehydratase | DXC44_15595 | Not Available | Negative | 3684489 - 3685211 | 27062.2 |
| cation:proton antiporter | DXC44_15600 | Not Available | Negative | 3685198 - 3687345 | 80167.6 |
| aspartate-semialdehyde dehydrogenase | DXC44_15605 | Not Available | Positive | 3687511 - 3688521 | 37267.8 |
| peptidylprolyl isomerase | DXC44_15610 | Not Available | Negative | 3689000 - 3689641 | 23291.7 |
| glycine--trna ligase | DXC44_15615 | Not Available | Negative | 3689652 - 3691193 | 59436.0 |
| dna gyrase/topoisomerase iv subunit a | DXC44_15620 | Not Available | Positive | 3691345 - 3694038 | 102634.0 |
| duf3316 domain-containing protein | DXC44_15625 | Not Available | Positive | 3694042 - 3694887 | 31970.1 |
| peptidase s41 | DXC44_15630 | Not Available | Positive | 3694896 - 3695924 | 39167.0 |
| Trna-leu | Not Available | Not Available | Positive | 3695993 - 3696077 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

