Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rok family protein | DXC44_15540 | Not Available | Negative | 3672388 - 3673359 | 34315.4 |
| abc transporter atp-binding protein | DXC44_15545 | Not Available | Positive | 3673512 - 3674231 | 26742.3 |
| abc transporter permease | DXC44_15550 | Not Available | Positive | 3674241 - 3675497 | 46624.1 |
| abc transporter permease | DXC44_15555 | Not Available | Positive | 3675502 - 3676743 | 45551.9 |
| efflux rnd transporter periplasmic adaptor subunit | DXC44_15560 | Not Available | Positive | 3676817 - 3677911 | 40051.5 |
| tolc family protein | DXC44_15565 | Not Available | Positive | 3677924 - 3679240 | 49375.2 |
| hypothetical protein | DXC44_15570 | Not Available | Negative | 3679398 - 3680351 | 38522.4 |
| gntr family transcriptional regulator | DXC44_15575 | Not Available | Negative | 3680475 - 3681308 | 31856.5 |
| iron-containing alcohol dehydrogenase | DXC44_15580 | Not Available | Positive | 3681385 - 3682779 | 51620.1 |
| hypothetical protein | DXC44_15585 | Not Available | Positive | 3682862 - 3683815 | 35152.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

