Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-glucuronidase | DXC44_15490 | Not Available | Positive | 3657996 - 3660863 | 110166.0 |
| rhamnogalacturonan acetylesterase | DXC44_15495 | Not Available | Positive | 3660882 - 3662156 | 47762.3 |
| glycoside hydrolase family 28 protein | DXC44_15500 | Not Available | Positive | 3662174 - 3663658 | 54936.3 |
| duf4450 domain-containing protein | DXC44_15505 | Not Available | Positive | 3663636 - 3664334 | 25996.3 |
| hypothetical protein | DXC44_15510 | Not Available | Positive | 3664331 - 3665134 | 30936.2 |
| glycoside hydrolase family 28 protein | DXC44_15515 | Not Available | Positive | 3665150 - 3666574 | 52173.9 |
| glycosyl hydrolase family 2 | DXC44_15520 | Not Available | Positive | 3666591 - 3669353 | 104125.0 |
| hypothetical protein | DXC44_15525 | Not Available | Negative | 3669707 - 3669829 | 4281.98 |
| isoaspartyl peptidase/l-asparaginase | DXC44_15530 | Not Available | Negative | 3670304 - 3671290 | 34958.3 |
| l-rhamnose mutarotase | DXC44_15535 | Not Available | Negative | 3671999 - 3672388 | 15271.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

