Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_15440 | Not Available | Positive | 3640595 - 3641389 | 30409.9 |
| hypothetical protein | DXC44_15445 | Not Available | Positive | 3642022 - 3642210 | 7038.73 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_15450 | Not Available | Positive | 3642492 - 3643481 | 36398.3 |
| alpha-l-rhamnosidase | DXC44_15455 | Not Available | Positive | 3643567 - 3645348 | 66666.3 |
| alpha/beta hydrolase | DXC44_15460 | Not Available | Positive | 3645391 - 3646674 | 48784.1 |
| silent information regulator protein sir2 | DXC44_15465 | Not Available | Positive | 3646690 - 3648543 | 69417.0 |
| glycoside hydrolase | DXC44_15470 | Not Available | Positive | 3648657 - 3651944 | 122938.0 |
| glycoside hydrolase family 88 protein | DXC44_15475 | Not Available | Positive | 3652085 - 3653218 | 43912.1 |
| beta-galactosidase | DXC44_15480 | Not Available | Negative | 3653337 - 3655451 | 81031.3 |
| glycoside hydrolase | DXC44_15485 | Not Available | Negative | 3655430 - 3657784 | 89193.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

