Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 2 protein | DXC44_15390 | Not Available | Negative | 3617318 - 3620173 | 106534.0 |
| duf4976 domain-containing protein | DXC44_15395 | Not Available | Negative | 3620187 - 3621581 | 51590.4 |
| oligogalacturonide lyase | DXC44_15400 | Not Available | Negative | 3621595 - 3622920 | 49998.5 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_15405 | Not Available | Negative | 3623141 - 3625444 | 86417.3 |
| tonb-dependent receptor | DXC44_15410 | Not Available | Negative | 3625469 - 3628837 | 124393.0 |
| recombinase | DXC44_15415 | Not Available | Negative | 3629204 - 3630385 | 46016.4 |
| tonb-dependent receptor | DXC44_15420 | Not Available | Positive | 3630718 - 3633900 | 118487.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_15425 | Not Available | Positive | 3633919 - 3635895 | 74931.2 |
| susc/raga family tonb-linked outer membrane protein | DXC44_15430 | Not Available | Positive | 3635936 - 3638785 | 106713.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_15435 | Not Available | Positive | 3638814 - 3640511 | 64147.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

