Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | DXC44_15340 | Not Available | Positive | 3601437 - 3602204 | 28167.3 |
| tetratricopeptide repeat protein | DXC44_15345 | Not Available | Positive | 3602241 - 3603941 | 62570.2 |
| transposase family protein | DXC44_15350 | Not Available | Negative | 3604057 - 3604278 | 8527.47 |
| hypothetical protein | DXC44_15355 | Not Available | Positive | 3604639 - 3604830 | 7652.25 |
| hypothetical protein | DXC44_15360 | Not Available | Negative | 3604812 - 3605099 | 10799.5 |
| aaa family atpase | DXC44_15365 | Not Available | Positive | 3605356 - 3606906 | 60739.3 |
| hypothetical protein | DXC44_15370 | Not Available | Negative | 3607044 - 3610343 | 125021.0 |
| rhamnogalacturonan acetylesterase | DXC44_15375 | Not Available | Negative | 3610365 - 3611921 | 57952.4 |
| rhamnogalacturonan lyase | DXC44_15380 | Not Available | Negative | 3612156 - 3613982 | 66998.9 |
| duf4982 domain-containing protein | DXC44_15385 | Not Available | Negative | 3614107 - 3617112 | 114693.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

