Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fructose-bisphosphatase class iii | DXC44_15290 | Not Available | Positive | 3589707 - 3591707 | 76532.4 |
| aspartate 1-decarboxylase | DXC44_15295 | Not Available | Negative | 3591837 - 3592187 | 12822.7 |
| pantoate--beta-alanine ligase | DXC44_15300 | Not Available | Negative | 3592209 - 3593057 | 31339.6 |
| glycogen synthase | DXC44_15305 | Not Available | Positive | 3593410 - 3594234 | 31933.0 |
| duf4270 domain-containing protein | DXC44_15310 | Not Available | Positive | 3594254 - 3595684 | 53481.1 |
| duf3127 domain-containing protein | DXC44_15315 | Not Available | Negative | 3595933 - 3596310 | 13929.4 |
| dna polymerase iii subunit beta | DXC44_15320 | Not Available | Positive | 3596464 - 3597588 | 41323.5 |
| 3'-5' exonuclease | DXC44_15325 | Not Available | Positive | 3597640 - 3598416 | 29605.2 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | DXC44_15330 | Not Available | Positive | 3598413 - 3599609 | 43166.3 |
| dna repair protein recn | DXC44_15335 | Not Available | Positive | 3599725 - 3601386 | 62006.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

