Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DXC44_15235 | Not Available | Negative | 3568546 - 3572001 | 126230.0 |
| sugar phosphate isomerase/epimerase | DXC44_15240 | Not Available | Negative | 3572031 - 3572915 | 33237.7 |
| response regulator | DXC44_15245 | Not Available | Negative | 3573081 - 3577484 | 168909.0 |
| glycoside hydrolase family 2 | DXC44_15250 | Not Available | Negative | 3577610 - 3580234 | 98289.4 |
| hypothetical protein | DXC44_15255 | Not Available | Positive | 3580309 - 3580533 | 8547.9 |
| abi family protein | DXC44_15260 | Not Available | Positive | 3581497 - 3582459 | 37710.6 |
| duf1016 domain-containing protein | DXC44_15270 | Not Available | Negative | 3583517 - 3584635 | 43242.8 |
| rna-binding transcriptional accessory protein | DXC44_15275 | Not Available | Positive | 3585010 - 3587139 | 79595.4 |
| nad(+) diphosphatase | DXC44_15280 | Not Available | Positive | 3587162 - 3587959 | 30147.3 |
| putative transporter | DXC44_15285 | Not Available | Positive | 3588036 - 3589697 | 59396.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

