Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DXC44_15185 | Not Available | Negative | 3549219 - 3552377 | 116638.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_15190 | Not Available | Negative | 3552921 - 3554717 | 68192.1 |
| tonb-dependent receptor | DXC44_15195 | Not Available | Negative | 3554741 - 3557842 | 114008.0 |
| hypothetical protein | DXC44_15200 | Not Available | Negative | 3557877 - 3558161 | 11190.4 |
| sigma-70 family rna polymerase sigma factor | DXC44_15205 | Not Available | Negative | 3558210 - 3558764 | 21477.1 |
| pectate lyase | DXC44_15210 | Not Available | Negative | 3558951 - 3562037 | 115928.0 |
| polysaccharide lyase | DXC44_15215 | Not Available | Negative | 3562039 - 3563721 | 61325.8 |
| duf3826 domain-containing protein | DXC44_15220 | Not Available | Negative | 3563921 - 3564589 | 25071.4 |
| polysaccharide lyase | DXC44_15225 | Not Available | Negative | 3564614 - 3566347 | 64377.8 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_15230 | Not Available | Negative | 3566516 - 3568525 | 75993.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

