Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide biosynthesis protein | DXC44_15085 | Not Available | Negative | 3522055 - 3523530 | 56403.1 |
| hypothetical protein | DXC44_15090 | Not Available | Negative | 3524094 - 3525203 | 43553.9 |
| transcriptional regulator | DXC44_15095 | Not Available | Negative | 3525508 - 3526341 | 32296.7 |
| site-specific integrase | DXC44_15100 | Not Available | Negative | 3526821 - 3528023 | 46824.8 |
| abc transporter atp-binding protein | DXC44_15105 | Not Available | Negative | 3528107 - 3529972 | 72108.0 |
| duf3805 domain-containing protein | DXC44_15110 | Not Available | Negative | 3529980 - 3530813 | 31663.2 |
| lactoylglutathione lyase | DXC44_15115 | Not Available | Negative | 3530856 - 3531233 | 14724.3 |
| mbl fold metallo-hydrolase | DXC44_15120 | Not Available | Negative | 3531251 - 3532042 | 30429.8 |
| hypothetical protein | DXC44_15125 | Not Available | Negative | 3532052 - 3533242 | 45188.1 |
| rida family protein | DXC44_15130 | Not Available | Negative | 3533405 - 3533782 | 13256.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

