Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | DXC44_14985 | Not Available | Negative | 3503847 - 3505415 | 59951.5 |
| duf86 domain-containing protein | DXC44_14990 | Not Available | Negative | 3505540 - 3505932 | 15161.6 |
| dna polymerase subunit beta | DXC44_14995 | Not Available | Negative | 3505925 - 3506218 | 11114.5 |
| hypothetical protein | DXC44_15000 | Not Available | Negative | 3506296 - 3506493 | 7933.8 |
| virulence protein e | DXC44_15005 | Not Available | Positive | 3506768 - 3507433 | 25080.9 |
| duf3987 domain-containing protein | DXC44_15010 | Not Available | Positive | 3507506 - 3509311 | 67498.1 |
| duf4248 domain-containing protein | DXC44_15015 | Not Available | Positive | 3509703 - 3509897 | 7367.08 |
| hypothetical protein | DXC44_15020 | Not Available | Positive | 3509996 - 3510226 | 8434.19 |
| dna-binding protein | DXC44_15025 | Not Available | Positive | 3510266 - 3510760 | 18040.5 |
| n-acetylmuramoyl-l-alanine amidase | DXC44_15030 | Not Available | Positive | 3511208 - 3511726 | 19565.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

