Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-trp | Not Available | Not Available | Positive | 3494130 - 3494205 | Not Available |
| uracil-dna glycosylase family protein | DXC44_14940 | Not Available | Negative | 3494273 - 3494866 | 23030.2 |
| hypothetical protein | DXC44_14945 | Not Available | Negative | 3494881 - 3495507 | 24334.1 |
| alanine:cation symporter family protein | DXC44_14950 | Not Available | Negative | 3495641 - 3497041 | 51024.4 |
| atp-binding protein | DXC44_14955 | Not Available | Negative | 3497047 - 3497694 | 24840.1 |
| helix-turn-helix domain-containing protein | DXC44_14960 | Not Available | Positive | 3497827 - 3501786 | 149351.0 |
| n-acetyltransferase | DXC44_14965 | Not Available | Positive | 3501936 - 3502214 | 10514.7 |
| duf2075 domain-containing protein | DXC44_14970 | Not Available | Negative | 3502322 - 3502854 | 20793.0 |
| hepn domain-containing protein | DXC44_14975 | Not Available | Negative | 3502958 - 3503359 | 15666.6 |
| nucleotidyltransferase domain-containing protein | DXC44_14980 | Not Available | Negative | 3503356 - 3503664 | 11591.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

