Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf255 domain-containing protein | DXC44_01315 | Not Available | Negative | 353097 - 354263 | 44550.2 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_01320 | Not Available | Negative | 354282 - 355772 | 55759.7 |
| susc/raga family tonb-linked outer membrane protein | DXC44_01325 | Not Available | Negative | 355793 - 359110 | 122723.0 |
| duf4974 domain-containing protein | DXC44_01330 | Not Available | Negative | 359163 - 360314 | 43733.0 |
| sigma-70 family rna polymerase sigma factor | DXC44_01335 | Not Available | Negative | 360382 - 360966 | 23161.5 |
| glycoside hydrolase | DXC44_01340 | Not Available | Negative | 361067 - 362731 | 61567.8 |
| duf4861 domain-containing protein | DXC44_01345 | Not Available | Negative | 362745 - 363959 | 45671.0 |
| glycoside hydrolase family 28 protein | DXC44_01350 | Not Available | Negative | 364098 - 365717 | 59176.8 |
| enoyl-acp reductase | DXC44_01355 | Not Available | Positive | 366094 - 366951 | 31326.5 |
| gliding motility lipoprotein gldb | DXC44_01360 | Not Available | Positive | 366959 - 367960 | 38875.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

