Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DXC44_14835 | Not Available | Negative | 3472574 - 3473758 | 45066.2 |
| prephenate dehydratase | DXC44_14840 | Not Available | Negative | 3473733 - 3474575 | 31728.1 |
| transcriptional regulator | DXC44_14845 | Not Available | Negative | 3474833 - 3475189 | 13384.4 |
| protease | DXC44_14850 | Not Available | Positive | 3475379 - 3475909 | 18952.9 |
| pyridoxal phosphate-dependent aminotransferase | DXC44_14855 | Not Available | Positive | 3475978 - 3477153 | 44742.1 |
| ai-2e family transporter | DXC44_14860 | Not Available | Negative | 3477154 - 3478155 | 37016.0 |
| tetratricopeptide repeat protein | DXC44_14865 | Not Available | Negative | 3478215 - 3479165 | 35751.7 |
| o-glcnacase | DXC44_14870 | Not Available | Negative | 3479180 - 3481393 | 84946.3 |
| recq family atp-dependent dna helicase | DXC44_14875 | Not Available | Negative | 3481440 - 3483335 | 72952.9 |
| single-stranded-dna-specific exonuclease recj | DXC44_14880 | Not Available | Negative | 3483453 - 3485225 | 66543.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

