Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cofactor-independent phosphoglycerate mutase | DXC44_14780 | Not Available | Positive | 3459310 - 3460521 | 44610.5 |
| threonine synthase | DXC44_14785 | Not Available | Positive | 3460612 - 3461913 | 47728.8 |
| abc transporter atp-binding protein | DXC44_14795 | Not Available | Negative | 3462505 - 3463512 | 37172.8 |
| iron abc transporter permease | DXC44_14800 | Not Available | Negative | 3463512 - 3464543 | 36079.6 |
| abc transporter substrate-binding protein | DXC44_14805 | Not Available | Negative | 3464659 - 3465795 | 42156.2 |
| hypothetical protein | DXC44_14810 | Not Available | Negative | 3465799 - 3466887 | 41380.2 |
| tonb-dependent receptor | DXC44_14815 | Not Available | Negative | 3466921 - 3468942 | 76064.9 |
| alpha/beta hydrolase | DXC44_14820 | Not Available | Positive | 3469498 - 3470469 | 34792.5 |
| prephenate dehydrogenase/arogenate dehydrogenase family protein | DXC44_14825 | Not Available | Negative | 3470709 - 3471482 | 29390.4 |
| 3-deoxy-7-phosphoheptulonate synthase | DXC44_14830 | Not Available | Negative | 3471487 - 3472554 | 39929.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

