Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gfo/idh/moca family oxidoreductase | DXC44_14730 | Not Available | Negative | 3443421 - 3444983 | 58054.7 |
| homoserine o-succinyltransferase | DXC44_14735 | Not Available | Positive | 3445366 - 3446283 | 35760.9 |
| u32 family peptidase | DXC44_14740 | Not Available | Positive | 3446280 - 3448109 | 69941.0 |
| zinc ribbon domain-containing protein | DXC44_14745 | Not Available | Positive | 3448096 - 3449058 | 36816.2 |
| tonb-dependent receptor | DXC44_14750 | Not Available | Negative | 3449298 - 3451721 | 92030.9 |
| luxr family transcriptional regulator | DXC44_14755 | Not Available | Negative | 3451891 - 3452511 | 23357.5 |
| fad-binding protein | DXC44_14760 | Not Available | Negative | 3452639 - 3454282 | 60757.8 |
| duf1847 domain-containing protein | DXC44_14765 | Not Available | Negative | 3454288 - 3454938 | 24414.5 |
| dna repair protein rada | DXC44_14770 | Not Available | Negative | 3454978 - 3456345 | 49904.5 |
| bifunctional aspartate kinase/homoserine dehydrogenase i | DXC44_14775 | Not Available | Positive | 3456873 - 3459305 | 88655.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

