Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DXC44_14675 | Not Available | Positive | 3424933 - 3428253 | 122247.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_14680 | Not Available | Positive | 3428267 - 3429955 | 64144.1 |
| hypothetical protein | DXC44_14685 | Not Available | Positive | 3429973 - 3431649 | 63024.8 |
| abc transporter atp-binding protein | DXC44_14690 | Not Available | Positive | 3432046 - 3433989 | 73600.3 |
| m13 family peptidase | DXC44_14695 | Not Available | Positive | 3434039 - 3436051 | 74933.9 |
| hypothetical protein | DXC44_14700 | Not Available | Positive | 3436081 - 3436584 | 19120.3 |
| efflux rnd transporter periplasmic adaptor subunit | DXC44_14705 | Not Available | Positive | 3436679 - 3437938 | 45795.5 |
| cusa/czca family heavy metal efflux rnd transporter | DXC44_14710 | Not Available | Positive | 3437950 - 3441033 | 112452.0 |
| tolc family protein | DXC44_14715 | Not Available | Positive | 3441044 - 3442213 | 43861.6 |
| nitroreductase family protein | DXC44_14720 | Not Available | Positive | 3442325 - 3443053 | 27942.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

