Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | DXC44_14615 | Not Available | Positive | 3408001 - 3408468 | 18149.8 |
| dihydrofolate reductase | DXC44_14620 | Not Available | Positive | 3408574 - 3410586 | 76610.1 |
| dna alkylation repair protein | DXC44_14625 | Not Available | Positive | 3410595 - 3411263 | 25716.3 |
| transcriptional repressor | DXC44_14630 | Not Available | Positive | 3411294 - 3411785 | 19166.0 |
| adenylosuccinate synthase | DXC44_14635 | Not Available | Positive | 3411802 - 3413073 | 46850.9 |
| susc/raga family tonb-linked outer membrane protein | DXC44_14645 | Not Available | Positive | 3414814 - 3418035 | 118870.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DXC44_14650 | Not Available | Positive | 3418057 - 3419565 | 57025.5 |
| sgnh/gdsl hydrolase family protein | DXC44_14655 | Not Available | Positive | 3420165 - 3421016 | 32546.0 |
| rna polymerase sigma-70 factor | DXC44_14665 | Not Available | Positive | 3423009 - 3423599 | 23285.1 |
| fecr family protein | DXC44_14670 | Not Available | Positive | 3423670 - 3424683 | 39115.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

