Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-isopropylmalate synthase | DXC44_14565 | Not Available | Positive | 3394993 - 3396489 | 54423.0 |
| 3-isopropylmalate dehydratase large subunit | DXC44_14570 | Not Available | Positive | 3396507 - 3397889 | 50031.1 |
| 3-isopropylmalate dehydratase small subunit | DXC44_14575 | Not Available | Positive | 3397903 - 3398499 | 22407.5 |
| 2-isopropylmalate synthase | DXC44_14580 | Not Available | Positive | 3398505 - 3400025 | 56824.1 |
| 3-isopropylmalate dehydrogenase | DXC44_14585 | Not Available | Positive | 3400119 - 3401180 | 39089.9 |
| ahpc/tsa family protein | DXC44_14590 | Not Available | Positive | 3401312 - 3402457 | 42890.5 |
| peptide-methionine (s)-s-oxide reductase | DXC44_14595 | Not Available | Negative | 3402526 - 3403011 | 18625.0 |
| tetratricopeptide repeat protein | DXC44_14600 | Not Available | Positive | 3403129 - 3403983 | 32554.4 |
| is1182 family transposase | DXC44_14605 | Not Available | Negative | 3404175 - 3405686 | 59191.7 |
| dna helicase recq | DXC44_14610 | Not Available | Negative | 3405852 - 3407669 | 69130.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

