Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xylanase | DXC44_14515 | Not Available | Positive | 3381788 - 3383173 | 51168.5 |
| hybrid sensor histidine kinase/response regulator | DXC44_14520 | Not Available | Positive | 3383309 - 3387241 | 149306.0 |
| rna-binding protein | DXC44_14525 | Not Available | Positive | 3387507 - 3387752 | 9144.0 |
| threonine/serine exporter family protein | DXC44_14530 | Not Available | Negative | 3387852 - 3389198 | 50204.2 |
| pasta domain-containing protein | DXC44_14535 | Not Available | Positive | 3389348 - 3389989 | 23471.9 |
| rlua family pseudouridine synthase | DXC44_14540 | Not Available | Positive | 3390008 - 3391081 | 40774.7 |
| d-alanine--d-alanine ligase | DXC44_14545 | Not Available | Positive | 3391078 - 3392052 | 36067.1 |
| acyltransferase | DXC44_14550 | Not Available | Positive | 3392081 - 3393238 | 44510.6 |
| hypothetical protein | DXC44_14555 | Not Available | Positive | 3393297 - 3393947 | 24878.8 |
| rhodanese-like domain-containing protein | DXC44_14560 | Not Available | Positive | 3393977 - 3394375 | 15066.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

