Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atpase | DXC44_14465 | Not Available | Negative | 3362219 - 3363364 | 42903.4 |
| phosphatase pap2 family protein | DXC44_14470 | Not Available | Negative | 3363603 - 3364379 | 29161.7 |
| hypothetical protein | DXC44_14475 | Not Available | Negative | 3364708 - 3367104 | 90591.4 |
| alpha-1,3/4-fucosidase | DXC44_14480 | Not Available | Negative | 3367351 - 3369210 | 69824.1 |
| duf4981 domain-containing protein | DXC44_14485 | Not Available | Negative | 3369228 - 3372287 | 116648.0 |
| beta-hexosaminidase | DXC44_14490 | Not Available | Negative | 3372296 - 3374611 | 87237.8 |
| duf4976 domain-containing protein | DXC44_14495 | Not Available | Negative | 3374629 - 3376212 | 61699.0 |
| hypothetical protein | DXC44_14500 | Not Available | Positive | 3376205 - 3376396 | 7550.55 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_14505 | Not Available | Negative | 3376420 - 3378255 | 68434.3 |
| tonb-dependent receptor | DXC44_14510 | Not Available | Negative | 3378285 - 3381506 | 116971.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

