Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hybrid sensor histidine kinase/response regulator | DXC44_14365 | Not Available | Positive | 3338274 - 3342272 | 152331.0 |
| duf3810 domain-containing protein | DXC44_14370 | Not Available | Negative | 3342490 - 3343530 | 40955.9 |
| duf2264 domain-containing protein | DXC44_14375 | Not Available | Negative | 3343672 - 3345987 | 88823.0 |
| neuraminidase | DXC44_14380 | Not Available | Negative | 3346079 - 3347353 | 49248.1 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | DXC44_14385 | Not Available | Negative | 3347776 - 3349074 | 48368.2 |
| dihydropteroate synthase | DXC44_14390 | Not Available | Positive | 3349193 - 3350050 | 31982.9 |
| tigr00159 family protein | DXC44_14395 | Not Available | Positive | 3350082 - 3350846 | 28478.5 |
| gnat family n-acetyltransferase | DXC44_14400 | Not Available | Negative | 3350924 - 3351934 | 39054.0 |
| duf2156 domain-containing protein | DXC44_14405 | Not Available | Negative | 3351918 - 3352820 | 34356.4 |
| lrgb family protein | DXC44_14410 | Not Available | Negative | 3353044 - 3353739 | 24440.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

