Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | DXC44_01260 | Not Available | Negative | 343156 - 344082 | 33083.5 |
| atp-binding cassette domain-containing protein | DXC44_01265 | Not Available | Positive | 344165 - 344986 | 31108.5 |
| duf4435 domain-containing protein | DXC44_01270 | Not Available | Positive | 345008 - 346003 | 39179.5 |
| doxx family protein | DXC44_01275 | Not Available | Negative | 346009 - 346449 | 16186.6 |
| had family hydrolase | DXC44_01285 | Not Available | Negative | 346687 - 347340 | 24293.1 |
| nitroreductase | DXC44_01290 | Not Available | Positive | 347403 - 347903 | 18878.7 |
| oxaloacetate decarboxylase | DXC44_01295 | Not Available | Positive | 348171 - 348422 | 8725.21 |
| oxaloacetate decarboxylase | DXC44_01300 | Not Available | Positive | 348453 - 350315 | 68971.7 |
| sodium ion-translocating decarboxylase subunit beta | DXC44_01305 | Not Available | Positive | 350315 - 351550 | 44261.9 |
| tlpa family protein disulfide reductase | DXC44_01310 | Not Available | Negative | 351746 - 353095 | 50412.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

