Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DXC44_14315 | Not Available | Positive | 3319027 - 3322098 | 113213.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_14320 | Not Available | Positive | 3322111 - 3323664 | 58382.6 |
| glycoside hydrolase | DXC44_14325 | Not Available | Negative | 3323784 - 3324785 | 37871.4 |
| beta-glucanase | DXC44_14330 | Not Available | Negative | 3325110 - 3326246 | 42262.9 |
| glycoside hydrolase family 16 protein | DXC44_14335 | Not Available | Negative | 3326258 - 3327106 | 33051.1 |
| carbohydrate-binding protein | DXC44_14340 | Not Available | Negative | 3327233 - 3328123 | 33030.6 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_14345 | Not Available | Negative | 3328158 - 3329843 | 64637.6 |
| susc/raga family tonb-linked outer membrane protein | DXC44_14350 | Not Available | Negative | 3329870 - 3332887 | 112653.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_14355 | Not Available | Negative | 3332922 - 3334814 | 72415.0 |
| tonb-dependent receptor | DXC44_14360 | Not Available | Negative | 3334829 - 3337957 | 116750.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

