Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysm peptidoglycan-binding domain-containing protein | DXC44_14210 | Not Available | Negative | 3292435 - 3293325 | 33332.2 |
| nucleoside-diphosphate kinase | DXC44_14215 | Not Available | Negative | 3293348 - 3293812 | 17401.2 |
| atp-dependent dna helicase recg | DXC44_14220 | Not Available | Negative | 3294033 - 3296129 | 79759.0 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | DXC44_14225 | Not Available | Negative | 3296131 - 3296790 | 24326.4 |
| dj-1 family protein | DXC44_14230 | Not Available | Negative | 3296787 - 3297338 | 19256.6 |
| tonb family protein | DXC44_14235 | Not Available | Negative | 3297342 - 3298235 | 31428.5 |
| biopolymer transporter exbd | DXC44_14240 | Not Available | Negative | 3298245 - 3298664 | 16032.8 |
| mota/tolq/exbb proton channel family protein | DXC44_14245 | Not Available | Negative | 3298671 - 3299384 | 25739.8 |
| pyridoxine 5'-phosphate synthase | DXC44_14250 | Not Available | Negative | 3299384 - 3300100 | 26433.6 |
| nad kinase | DXC44_14255 | Not Available | Positive | 3300219 - 3301091 | 32172.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

