Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class a beta-lactamase-related serine hydrolase | DXC44_14100 | Not Available | Negative | 3258063 - 3259148 | 39702.4 |
| glycoside hydrolase family 127 protein | DXC44_14105 | Not Available | Negative | 3259226 - 3261148 | 73146.0 |
| hypothetical protein | DXC44_14115 | Not Available | Negative | 3262757 - 3264370 | 61028.7 |
| hypothetical protein | DXC44_14120 | Not Available | Negative | 3264547 - 3265491 | 36231.2 |
| endo-polygalacturonase | DXC44_14125 | Not Available | Negative | 3265682 - 3267118 | 53689.4 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_14130 | Not Available | Negative | 3267318 - 3269345 | 75464.2 |
| tonb-dependent receptor | DXC44_14135 | Not Available | Negative | 3269368 - 3272694 | 122473.0 |
| sigma-70 family rna polymerase sigma factor | DXC44_14140 | Not Available | Negative | 3272738 - 3273253 | 20705.7 |
| helix-turn-helix domain-containing protein | DXC44_14145 | Not Available | Negative | 3273454 - 3276267 | 106857.0 |
| six-hairpin glycosidase | DXC44_14150 | Not Available | Negative | 3276426 - 3279164 | 102895.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

