Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide chain release factor 3 | DXC44_13900 | Not Available | Negative | 3202056 - 3203624 | 59982.5 |
| dtdp-4-dehydrorhamnose reductase | DXC44_13905 | Not Available | Negative | 3203631 - 3204488 | 31996.1 |
| duf4924 family protein | DXC44_13910 | Not Available | Negative | 3204503 - 3205045 | 21340.1 |
| lyse family translocator | DXC44_13915 | Not Available | Negative | 3205117 - 3205776 | 24319.7 |
| phosphoribosylformylglycinamidine synthase | DXC44_13920 | Not Available | Positive | 3205927 - 3209631 | 137200.0 |
| hybrid sensor histidine kinase/response regulator | DXC44_13925 | Not Available | Positive | 3209709 - 3213725 | 154470.0 |
| chromate transporter | DXC44_13930 | Not Available | Positive | 3213730 - 3214278 | 20451.8 |
| chromate transporter | DXC44_13935 | Not Available | Positive | 3214275 - 3214847 | 21054.4 |
| hypothetical protein | DXC44_13940 | Not Available | Negative | 3215134 - 3216633 | 58071.4 |
| excinuclease abc subunit uvra | DXC44_13945 | Not Available | Positive | 3216715 - 3219516 | 104910.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

