Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_01200 | Not Available | Positive | 329961 - 330827 | 33226.6 |
| dihydrolipoamide acyltransferase | DXC44_01205 | Not Available | Positive | 331060 - 331434 | 13047.7 |
| helicase | DXC44_01210 | Not Available | Negative | 331618 - 333510 | 72847.6 |
| aconitate hydratase | DXC44_01215 | Not Available | Positive | 333682 - 335925 | 81027.5 |
| nadp-dependent isocitrate dehydrogenase | DXC44_01220 | Not Available | Positive | 335929 - 337074 | 41451.8 |
| citrate/2-methylcitrate synthase | DXC44_01225 | Not Available | Positive | 337087 - 338430 | 51029.5 |
| gnat family n-acetyltransferase | DXC44_01235 | Not Available | Negative | 339108 - 339569 | 17839.6 |
| duf1295 domain-containing protein | DXC44_01245 | Not Available | Positive | 340141 - 340905 | 29496.6 |
| nadh:flavin oxidoreductase | DXC44_01250 | Not Available | Positive | 340968 - 342191 | 45532.4 |
| sdr family nad(p)-dependent oxidoreductase | DXC44_01255 | Not Available | Positive | 342188 - 343048 | 31842.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

