Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i asparaginase | DXC44_13745 | Not Available | Negative | 3162212 - 3163255 | 38728.6 |
| glycoside hydrolase family 16 protein | DXC44_13750 | Not Available | Negative | 3163707 - 3164498 | 30524.4 |
| phosphoglucosamine mutase | DXC44_13755 | Not Available | Negative | 3164589 - 3165977 | 50475.7 |
| duf4827 domain-containing protein | DXC44_13760 | Not Available | Negative | 3165974 - 3166609 | 24185.6 |
| bifunctional oligoribonuclease/pap phosphatase nrna | DXC44_13765 | Not Available | Negative | 3166692 - 3167732 | 39348.3 |
| comec family competence protein | DXC44_13770 | Not Available | Negative | 3167782 - 3169701 | 72625.5 |
| ribulose-phosphate 3-epimerase | DXC44_13775 | Not Available | Negative | 3169748 - 3170401 | 23913.3 |
| porin family protein | DXC44_13780 | Not Available | Negative | 3170477 - 3171772 | 48112.6 |
| sigma-70 family rna polymerase sigma factor | DXC44_13785 | Not Available | Negative | 3171775 - 3172317 | 20885.1 |
| hypothetical protein | DXC44_13790 | Not Available | Positive | 3172475 - 3173257 | 29103.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

