Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | DXC44_13645 | Not Available | Positive | 3136968 - 3137603 | 24920.2 |
| duf4974 domain-containing protein | DXC44_13650 | Not Available | Positive | 3137816 - 3138898 | 41095.2 |
| susc/raga family tonb-linked outer membrane protein | DXC44_13655 | Not Available | Positive | 3139046 - 3142783 | 139679.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_13660 | Not Available | Positive | 3142799 - 3144388 | 60787.8 |
| hypothetical protein | DXC44_13665 | Not Available | Positive | 3144401 - 3145645 | 47335.0 |
| had family hydrolase | DXC44_13670 | Not Available | Negative | 3145758 - 3146492 | 27115.4 |
| glucose-6-phosphate isomerase | DXC44_13675 | Not Available | Negative | 3146642 - 3147985 | 49078.8 |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | DXC44_13680 | Not Available | Negative | 3147999 - 3148994 | 37117.2 |
| lysine--trna ligase | DXC44_13685 | Not Available | Negative | 3149051 - 3150781 | 66493.3 |
| hypothetical protein | DXC44_13690 | Not Available | Negative | 3150856 - 3151464 | 23097.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

