Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DXC44_13495 | Not Available | Positive | 3090627 - 3093902 | 121669.0 |
| susd family outer membrane lipoprotein nanu | DXC44_13500 | Not Available | Positive | 3093922 - 3095424 | 57014.6 |
| sialidase | DXC44_13505 | Not Available | Positive | 3095557 - 3097197 | 60315.2 |
| beta-n-acetylhexosaminidase | DXC44_13510 | Not Available | Positive | 3097201 - 3099207 | 77047.3 |
| sialate o-acetylesterase | DXC44_13515 | Not Available | Positive | 3099209 - 3099874 | 25131.8 |
| sialate o-acetylesterase | DXC44_13520 | Not Available | Positive | 3099871 - 3101934 | 77523.1 |
| glycoside hydrolase family 2 protein | DXC44_13525 | Not Available | Positive | 3101961 - 3104528 | 98674.7 |
| beta-n-acetylhexosaminidase | DXC44_13530 | Not Available | Positive | 3104545 - 3106869 | 86312.9 |
| cyclically-permuted mutarotase family protein | DXC44_13535 | Not Available | Positive | 3107056 - 3108183 | 40509.5 |
| beta-n-acetylhexosaminidase | DXC44_13540 | Not Available | Positive | 3108180 - 3110234 | 77083.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

