Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_13445 | Not Available | Positive | 3079459 - 3080544 | 41253.2 |
| abc transporter atp-binding protein | DXC44_13450 | Not Available | Positive | 3080552 - 3082204 | 61635.1 |
| hypothetical protein | DXC44_13455 | Not Available | Positive | 3082188 - 3083102 | 33767.3 |
| s26 family signal peptidase | DXC44_13460 | Not Available | Positive | 3083071 - 3083574 | 19457.9 |
| duf1343 domain-containing protein | DXC44_13465 | Not Available | Negative | 3083565 - 3084725 | 43609.9 |
| hdig domain-containing protein | DXC44_13470 | Not Available | Positive | 3084779 - 3085315 | 20311.5 |
| lps-assembly protein lptd | DXC44_13475 | Not Available | Positive | 3085406 - 3088144 | 104054.0 |
| uracil-dna glycosylase | DXC44_13480 | Not Available | Negative | 3088221 - 3088883 | 24957.5 |
| aspartate--ammonia ligase | DXC44_13485 | Not Available | Negative | 3089001 - 3090041 | 39784.2 |
| Trna-arg | Not Available | Not Available | Positive | 3090244 - 3090318 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

